Codes

Libraries

Here are the main codes developed in the team—do not hesitate to get in touch if you want to collaborate on future developments!

dolfin_warp

A set of FEniCS- and VTK-based python tools for Finite Element Digital Image Correlation/Image Registration/Motion Tracking.

DOI: https://doi.org/10.5281/zenodo.8010786
GitHub: https://github.com/mgenet/dolfin_warp
PyPI: https://pypi.org/project/dolfin-warp
Tutorials: https://mgenet.github.io/dolfin_warp-tutorials

dolfin_mech

A set of FEniCS-based python tools for Computational Mechanics.

DOI: https://doi.org/10.5281/zenodo.10533833
GitHub: https://github.com/mgenet/dolfin_mech
PyPI: https://pypi.org/project/dolfin-mech

NeuROM

The reduced-order modelling code used to create surrogate models based on an hybridization of standard reduced-order modelling methods such as the PGD and deep learning methods.

DOI: https://doi.org/10.5281/zenodo.13772741
GitHub: https://github.com/AlexandreDabySeesaram/NeuROM
PyPI: https://pypi.org/project/NeuROM-Py

Papers with codes

In order to allow for long term reproducibility of research results, we now try to systematically publish, in addition to the papers themselves, Jupyter notebooks with the code to reproduce the figures of the papers, as well as Docker images to run the notebooks—in principle you can reproduce the computations directly in your browser thanks to Binder!

[Genet, 2023, C. R. Méca.]

Title: Finite strain formulation of the discrete equilibrium gap principle: application to mechanically consistent regularization for large motion tracking
DOI: https://doi.org/10.5802/crmeca.228
Demos: https://mgenet.github.io/N-DEG-paper-demos

[Peyraut & Genet, 2024, Biomech. Model. Mecanobiol.]

Title: A model of mechanical loading of the lungs including gravity and a balancing heterogeneous pleural pressure
DOI: https://doi.org/10.1007/s10237-024-01876-w
Demos: https://alicepeyraut.github.io/gravity_modeling_paper_demos_github

[Peyraut & Genet, 2025, C. R. Méca.]

Title: Finite strain formulation of the discrete equilibrium gap principle: application to direct parameter estimation from large full-fields measurements
DOI: https://doi.org/10.5802/crmeca.279
Demos: https://alicepeyraut.github.io/identification-methods-paper-demos-github

[Manoochehrtayebi, Bel-Brunon & Genet, 2025, Int. J. Sol. Struct.]

Title: Finite strain micro-poro-mechanics: formulation and compared analysis with macro-poro-mechanics
DOI: https://doi.org/10.1016/j.ijsolstr.2025.113354
Demos: https://mgenet.github.io/Micro-Macro-Poro-paper-demos